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A
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B
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C
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D
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E
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F
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G
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H
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I
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L
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M
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O
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P
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R
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S
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T
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U
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V
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X
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Y
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Z
A
analyse_trajectory() (polypy.msd.RegionalMSD method)
Archive (class in polypy.read)
B
build_map() (polypy.density.Density method)
C
calculate_charge_density() (polypy.analysis.OneDimensionalChargeDensity method)
calculate_distances() (polypy.msd.MSD method)
calculate_electric_field() (polypy.analysis.OneDimensionalChargeDensity method)
calculate_electrostatic_potential() (polypy.analysis.OneDimensionalChargeDensity method)
calculate_rcplvs() (in module polypy.utils)
cart_2_frac() (in module polypy.utils)
check_trajectory() (polypy.msd.RegionalMSD method)
clean_data() (polypy.msd.MSDContainer method)
combined_density_plot() (in module polypy.plotting)
combined_density_plot_multiple_species() (in module polypy.plotting)
conductivity() (in module polypy.analysis)
Config (class in polypy.read)
D
Density (class in polypy.density)
E
electric_field_plot() (in module polypy.plotting)
electrostatic_potential_plot() (in module polypy.plotting)
F
find_limits() (polypy.density.Density method)
G
get_atom() (polypy.read.Trajectory method)
get_config() (polypy.read.Trajectory method)
H
History (class in polypy.read)
I
initialise_new_trajectory() (polypy.msd.RegionalMSD method)
L
line_plot() (in module polypy.plotting)
M
MSD (class in polypy.msd)
msd() (polypy.msd.MSD method)
msd_plot() (in module polypy.plotting)
MSDContainer (class in polypy.msd)
O
one_dimension_square_distance() (polypy.msd.MSD method)
one_dimensional_charge_density_plot() (in module polypy.plotting)
one_dimensional_density() (polypy.density.Density method)
one_dimensional_density_plot() (in module polypy.plotting)
OneDimensionalChargeDensity (class in polypy.analysis)
P
pbc() (in module polypy.utils)
polypy.analysis (module)
polypy.density (module)
polypy.msd (module)
polypy.plotting (module)
polypy.read (module)
polypy.utils (module)
R
read_archive() (polypy.read.Archive method)
read_config() (polypy.read.Config method)
read_history() (polypy.read.History method)
RegionalMSD (class in polypy.msd)
remove_final_timesteps() (polypy.read.Trajectory method)
remove_initial_timesteps() (polypy.read.Trajectory method)
S
smooth_msd_data() (polypy.msd.MSDContainer method)
squared_displacements() (polypy.msd.MSD method)
system_volume() (in module polypy.analysis)
T
three_dimension_square_distance() (polypy.msd.MSD method)
Trajectory (class in polypy.read)
two_dimension_square_distance() (polypy.msd.MSD method)
two_dimensional_charge_density() (in module polypy.analysis)
two_dimensional_charge_density_plot() (in module polypy.plotting)
two_dimensional_density() (polypy.density.Density method)
two_dimensional_density_plot() (in module polypy.plotting)
two_dimensional_density_plot_multiple_species() (in module polypy.plotting)
U
update_map() (polypy.density.Density method)
update_msd_info() (polypy.msd.RegionalMSD method)
V
volume_plot() (in module polypy.plotting)
X
x_diffusion_coefficient() (polypy.msd.MSDContainer method)
xy_diffusion_coefficient() (polypy.msd.MSDContainer method)
xyz_diffusion_coefficient() (polypy.msd.MSDContainer method)
xz_diffusion_coefficient() (polypy.msd.MSDContainer method)
Y
y_diffusion_coefficient() (polypy.msd.MSDContainer method)
yz_diffusion_coefficient() (polypy.msd.MSDContainer method)
Z
z_diffusion_coefficient() (polypy.msd.MSDContainer method)
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